PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03665
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 276aa    MW: 32583.3 Da    PI: 7.9117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03665genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-18651147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
      Ro05_G03665  6 RGHWRPAEDEQLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 51
                     899*****************************.***********996 PP
2Myb_DNA-binding54.33.2e-1758101146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
      Ro05_G03665  58 RNPFSEEEEERLLASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 101
                      789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MCSSTRGHWR PAEDEQLREL VERYGPHNWN AIAEKLQGRS GKSCRLRWFN QLDPRINRNP  60
FSEEEEERLL ASHRIHGNRW AVIARLFPGR TDNAVKNHWH VIMARRCRER SRLHHHLHAK  120
RMTRTSTTTS STSPDHHQTL MRTINHRELP LNYKQDLQMI LDCRHEKRNL ESSYIGNYCC  180
DTERNYHYYP AAPLFPNSDQ FYPNTCIAMH RDKNHEPIEF YDFLQVNTES NRSEVIDINT  240
RKDEEEVDQL EAMRHEQTKA AGAAFIDFFS GGSVGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-83MYB family protein