PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G04576
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 336aa    MW: 38375.1 Da    PI: 5.3914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G04576genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.42e-2161422128
          NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  p+G+rFhP d+elv +yL+k+ v g++++  +v++++ d y   ePw +  ++ +    + + +yfF++r+k ++t kr  r++ sg+W+   + kev
  Ro05_G04576   6 PVGVRFHPLDHELVGYYLHKRaVMGDQFRP-NVVSDCpDFYGEnEPWVIWDMYGGgesnKVEALYFFTHRKKLNPTAKRFDRKVGSGTWSGESS-KEV 101
                  89****************998355555666.89999999985449**99732222221133466*************************97765.677 PP

          NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++      k+ ++g+ + + +  g   + ++  W+m+ey++
  Ro05_G04576 102 YNTtttthgKSVVIGISRHFRYEGG-CDSHHNGAWLMQEYQM 142
                  77656666566669******99855.555589********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MELGYPVGVR FHPLDHELVG YYLHKRAVMG DQFRPNVVSD CPDFYGENEP WVIWDMYGGG  60
ESNKVEALYF FTHRKKLNPT AKRFDRKVGS GTWSGESSKE VYNTTTTTHG KSVVIGISRH  120
FRYEGGCDSH HNGAWLMQEY QMTENDITVL CTLRKNPRKL PPPPTTDTAN VIKKRKRIGY  180
GNGNGDGGDQ DHLPRKPKAA RKPKRKETNC DQEQAGSSGL ADQDHQQQLS IVKETNNYEV  240
QNQDQIQHDQ DYYPEPYPDL LDFDEPHYSL DELVASPTPH LLSSLESNEF QSQKDQSSYD  300
DGDNFNLVSN YQSYDSNNFG LVSEDQLYDS NNFSLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174204KRKRIGYGNGNGDGGDQDHLPRKPKAARKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-15NAC family protein