PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07352

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 676aa MW: 74123.4 Da PI: 5.6373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07352	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	504	549	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI +L Ro05_G07352 504 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 549 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MNLWTDDNAS LMEAFMSNSD LTSFWAAQPA QPVAQAAHPL HQPQSSASTS DYPRPPAQSQ 60 APPPPPVAAF NQETLMQRLQ ALIEGARESW TYAIFWQSSY DMSGASVLGW GEGFYKDERD 120 KGKVKPKTTT SLVEQEYRKK MLRDLNSMIC GSDTSADDAI VDQEVTDTEW FFLVSMTQNF 180 VNGSGLPGQA FFHSNPIWVA GPDRLAASSC ERARQGQVFG LETMVCVPTA NGVVELGSTE 240 LIYQTSDLMN KVRVLFDFSN LEVGSWPVGG AADQGENDPS SLWINDHPSS TIEVVKDSVN 300 IGPATSAPSA GNHPISKPIQ FDNPSSSSLS ENPSAVLQVQ AQQQQHNHQV QTQSFFTREL 360 NFSDYGYDGS SVKHSNSNSH SMKPESGEIL NFGESRRTSY SANNGKLFSA QSQIMAAAED 420 TNKKKRSPPS RGSHDEGILS FSSGVILPSS SGVVKSSAGP ADSDHSDLEA SVAREADSSR 480 VVDPEKRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLG 540 DAISYITELK TKLQSTESDK EDLHKQVETL SKEVQESRSC SGADQELKGS NKLIDLDIDV 600 KILGWDARIQ IQCSKKNHPA ARLMAALMEL DLDVHHASVS VVNDLMIQQA TVRMGSRIYT 660 QEQLRLALSS KVGDAR

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MNLWTDDNAS LMEAFMSNSD LTSFWAAQPA QPVAQAAHPL HQPQSSASTS DYPRPPAQSQ  60
APPPPPVAAF NQETLMQRLQ ALIEGARESW TYAIFWQSSY DMSGASVLGW GEGFYKDERD  120
KGKVKPKTTT SLVEQEYRKK MLRDLNSMIC GSDTSADDAI VDQEVTDTEW FFLVSMTQNF  180
VNGSGLPGQA FFHSNPIWVA GPDRLAASSC ERARQGQVFG LETMVCVPTA NGVVELGSTE  240
LIYQTSDLMN KVRVLFDFSN LEVGSWPVGG AADQGENDPS SLWINDHPSS TIEVVKDSVN  300
IGPATSAPSA GNHPISKPIQ FDNPSSSSLS ENPSAVLQVQ AQQQQHNHQV QTQSFFTREL  360
NFSDYGYDGS SVKHSNSNSH SMKPESGEIL NFGESRRTSY SANNGKLFSA QSQIMAAAED  420
TNKKKRSPPS RGSHDEGILS FSSGVILPSS SGVVKSSAGP ADSDHSDLEA SVAREADSSR  480
VVDPEKRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLG  540
DAISYITELK TKLQSTESDK EDLHKQVETL SKEVQESRSC SGADQELKGS NKLIDLDIDV  600
KILGWDARIQ IQCSKKNHPA ARLMAALMEL DLDVHHASVS VVNDLMIQQA TVRMGSRIYT  660
QEQLRLALSS KVGDAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	486	494	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein