PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G07373
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 242aa    MW: 26313.1 Da    PI: 6.0124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G07373genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126789123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Ro05_G07373 67 YTCTFCRREFRSAQALGGHMNVH 89
                 9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MAELGLLSLT QLQKLALSQQ SHQSNPRSVW MWNPKQAQDQ EDDSWEVRAF AEDTGNAMGT  60
TWPPRSYTCT FCRREFRSAQ ALGGHMNVHR RDRAILHEVQ HPSSISINPS AVSSSNSSFI  120
IPTQEFLAAN GGLCLLYQLP NPNNGAFSST SIATTPTATL INNTVESSTS VVPSTLLSIP  180
PNPPHDYLVT SSSCFVGPHG VADSSKNSHC HSKRSADQDQ PSRSGVVDDV EEIDLELRLG  240
PS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-33C2H2 family protein