PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G09352

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 257aa MW: 29235.1 Da PI: 8.492

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G09352	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7e-06	104	123	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Ro05_G09352 104 FSCHVCFKTFNRYNNLQMHM 123 89*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MEPSEISSRF ARTLNLFPNE KEPDLVPNSH DLGFSCENPK SSSEDHNKLA EDEVTVALRI 60 GLPECSDGSA NSTEKEVSDH ENVTGEQKYW IPTREQILIG FTHFSCHVCF KTFNRYNNLQ 120 MHMWGHGSQY RRGPESLKGT QPRAMLGIPC YCCAEGCKNN IDYPRAKPLK DFRTLQTHYK 180 RKHGVKPFMC RKCGKLLAVK GDWRTHEKNC GKRWLCTCGS DFKHKRSLKD HMKAFGSGHS 240 PFPPSSFNED STAASFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-105	C2H2 family protein