PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G11047

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 350aa MW: 38095.2 Da PI: 4.5334

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G11047	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.9	2.6e-36	31	122	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+e ++liswse g++f+v+ + efa++vLpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ Fk+g+k ll++i+ Ro05_G11047 31 FLTKTYELVDDPEADDLISWSEGGSTFIVWRPAEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEKGLLREIQ 118 9***************************************************************99.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Ro05_G11047 119 RRKI 122 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MASLPDQNGD SAPSGGGGSV RDSQRTIPTP FLTKTYELVD DPEADDLISW SEGGSTFIVW 60 RPAEFARDVL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FANDCFKRGE KGLLREIQRR 120 KISPAVSAST AAVAAAAMVT AAATVSAAAL PVAAASVSPA NSGDEQVISS NSSPMAVPPP 180 VAPLLQRSRS CTTAEILEEN ERLRKENMQL SHELTQLRGL CNNILAMMTN YASGQLARGG 240 AAAEDKRPPP PPAMELSPVK KAEETQNAAV SGDAKEEGSA EEEDMEEDQE EETTPKLFGV 300 SIGVKRVRRD EEEEDDQERQ NQGSDEVVKS EPSDGSSKHD KEATWLELRK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MASLPDQNGD SAPSGGGGSV RDSQRTIPTP FLTKTYELVD DPEADDLISW SEGGSTFIVW  60
RPAEFARDVL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FANDCFKRGE KGLLREIQRR  120
KISPAVSAST AAVAAAAMVT AAATVSAAAL PVAAASVSPA NSGDEQVISS NSSPMAVPPP  180
VAPLLQRSRS CTTAEILEEN ERLRKENMQL SHELTQLRGL CNNILAMMTN YASGQLARGG  240
AAAEDKRPPP PPAMELSPVK KAEETQNAAV SGDAKEEGSA EEEDMEEDQE EETTPKLFGV  300
SIGVKRVRRD EEEEDDQERQ NQGSDEVVKS EPSDGSSKHD KEATWLELRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	9e-81	HSF family protein