PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11051
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 108aa    MW: 12278.1 Da    PI: 9.2645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-104885139
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     +g W++eEd+ ++++v++ G ++W  Ia+ ++ g  +kq
      Ro05_G11051 48 KGYWSKEEDDCIIKLVEKNGARRWFVIAKFLP-GQIGKQ 85
                     789*****************************.877765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MRGGCSSLWV VNVPAQTTLY ETTAGIPGRS DVQCLHHWQK VLNPEIIKGY WSKEEDDCII  60
KLVEKNGARR WFVIAKFLPG QIGKQSEKVI YGYKSQSVSF RRSSTLCE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-25MYB family protein