PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G11429

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 636aa MW: 71324.3 Da PI: 6.1433

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G11429	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3.1e-14	437	483	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er+RR+++N++f+ L++++P +K +K++iL A+eY+k+L+ Ro05_G11429 437 NHVLSERKRREKLNERFSILKSMVPAI-----RKDDKVSILDDAIEYLKDLE 483 78999*******************5.....5**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MGTMLQNQER VPENLRKQLA LAVRSIQWSY AIFWSISPRQ PGVLEWGDGY YNGDIKTRKT 60 VQAIELNADQ MGLQRSEHLR ELYESLSAGE ASPQARRPSA ALSPEDLADT EWYYLVCMSF 120 VFNIGQGLPG RTLANGQPIW LCNAHYADSK VFSRSLLAKT VVCFPYLRGV IELGVTELVL 180 EDPGLIQHVK TSFLEVPYPL SSKKTNPSAG IYRNEKDLAG SALDQDVIDT KFIPVIRCEE 240 IDVTSLNNSS NGFGPNQPAE DSFMVEGMNG GASQVQSWQY LDDELSNYVH HSMDSSDCIS 300 QTLVYPEKVV SGPKGEKVVS DHFLHDNKEC NSTKQTSMEP QSNDLHYQSV LSSLLKSSHQ 360 LILGPHFQNG HQESSFVSWK RGSVKCQKQQ GGSPQYLLKK ILFEVPRMHV VCVLESPEDN 420 GDRNGVWRPE AGESLMNHVL SERKRREKLN ERFSILKSMV PAIRKDDKVS ILDDAIEYLK 480 DLEKRVAELE TSRESTDFEA KTKRKPQENS ERTSDNCCNS KMSNGKKPLV YKRKACDIDE 540 TETETNYVAS KNGSSDNVKV SMNNKGALIE MRFPWREGVL LEVMDVTSNF HLDTHSVESS 600 TTDGILSLTI QSKFKGSTIA SAGTIEQALQ RIARNC

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MGTMLQNQER VPENLRKQLA LAVRSIQWSY AIFWSISPRQ PGVLEWGDGY YNGDIKTRKT  60
VQAIELNADQ MGLQRSEHLR ELYESLSAGE ASPQARRPSA ALSPEDLADT EWYYLVCMSF  120
VFNIGQGLPG RTLANGQPIW LCNAHYADSK VFSRSLLAKT VVCFPYLRGV IELGVTELVL  180
EDPGLIQHVK TSFLEVPYPL SSKKTNPSAG IYRNEKDLAG SALDQDVIDT KFIPVIRCEE  240
IDVTSLNNSS NGFGPNQPAE DSFMVEGMNG GASQVQSWQY LDDELSNYVH HSMDSSDCIS  300
QTLVYPEKVV SGPKGEKVVS DHFLHDNKEC NSTKQTSMEP QSNDLHYQSV LSSLLKSSHQ  360
LILGPHFQNG HQESSFVSWK RGSVKCQKQQ GGSPQYLLKK ILFEVPRMHV VCVLESPEDN  420
GDRNGVWRPE AGESLMNHVL SERKRREKLN ERFSILKSMV PAIRKDDKVS ILDDAIEYLK  480
DLEKRVAELE TSRESTDFEA KTKRKPQENS ERTSDNCCNS KMSNGKKPLV YKRKACDIDE  540
TETETNYVAS KNGSSDNVKV SMNNKGALIE MRFPWREGVL LEVMDVTSNF HLDTHSVESS  600
TTDGILSLTI QSKFKGSTIA SAGTIEQALQ RIARNC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	447	ERKRRE
2	443	448	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein