PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11753
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 332aa    MW: 36253.1 Da    PI: 6.507
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11753genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-1296140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
      Ro05_G11753  96 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 140
                      8*****************************89************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGGIRKSAS MGNLTHYAGS GSGLLHTNPD  60
SPGDAADHSA AADGYASEDF VPGSSSSCRE RKKGTPWTEE EHRMFLLGLQ KLGKGDWRGI  120
ARNYVISRTP TQVASHAQKY FIRQSNVSRR KRRSSLFDIV ADDSVDTPME PLDFLPENHL  180
EDETESNHPL PAPPALDEEC ESMASTNSDG EPTPPKPDNS QSCYPVMYPA YFSPFPFPFP  240
MWPGYSTEPT KMDTHEVLKP TAVHSKSPIN VDELVGMSDL SLGEPKDQAG SSLLSLKLVE  300
GSSRQSAFHA NPSSGSSNMK SVSSSEVPNH QY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-112MYB_related family protein