PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11789
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family RAV
Protein Properties Length: 311aa    MW: 35625.1 Da    PI: 6.3098
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11789genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.22e-084287253
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                  +kGV + k  g W A+I        +k+++lg + t+ eAa a+++a+ k+
  Ro05_G11789 42 IFKGVVRLK-GGTWGARISYK-----YKQYWLGAYETEIEAAMAYDRAAVKF 87
                 69***8777.9******8773.....5**********99*********9775 PP
2B343.46.2e-14159246186
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  f+k+l++ dv+ +++l      + ++   +++  s   t+ d +grsW++ ++y+++  +++lt+GW +F +  +Lke+D+vv+++ +
  Ro05_G11789 159 FKKELSHMDVTHKCCLFQGDYAVLDIplTEDEGWSSYATFCDIHGRSWTFGYSYWQSTLSFMLTSGWGHFFEMYNLKEKDTVVIYRCW 246
                  56667777777776554333333333553344455578999*******************************************9544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MSIDVSSDST VEMVVQDTNL HPISPSHQNG RVRSSQQRSS SIFKGVVRLK GGTWGARISY  60
KYKQYWLGAY ETEIEAAMAY DRAAVKFQRV YSLNFHRSNY SIEESAFQSQ CSTEEILSML  120
QDKTYLSMLM NFISNYSSSI GAHTETFMKE QGISYQFLFK KELSHMDVTH KCCLFQGDYA  180
VLDIPLTEDE GWSSYATFCD IHGRSWTFGY SYWQSTLSFM LTSGWGHFFE MYNLKEKDTV  240
VIYRCWYQGD AAGRKFNVIN VLRSNVESSV VGMNAEQDVG LRGSLNMEFE VDCTREVTKR  300
GFKLFGVEIS G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-31RAV family protein