PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11916
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 101aa    MW: 11501.8 Da    PI: 7.2388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11916genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68e-101442129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+WT eEd++lvd+++++G+ +W+  ++
      Ro05_G11916 14 KGPWTSEEDDILVDYIQEHGPSSWSNLSK 42
                     79**********************98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    
MGRAPYCYKN RLKKGPWTSE EDDILVDYIQ EHGPSSWSNL SKNTYVYPSS TQTCNKRPCL  60
ESEKEFEQVK IKYCYYSYKC GSAADLKQLG NTIGASDADH A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.15e-15MYB family protein