PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11958
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 184aa    MW: 20130.7 Da    PI: 7.1305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11958genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-161970156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 + ykG+r +  +g+Wv+eIr+p+++    r++lg+++ +++Aa+a++aa  +++ge
  Ro05_G11958 19 CLYKGIRMRA-WGKWVSEIRVPRSG---GRIWLGSYDAPDKAARAYDAALYCIYGE 70
                 56*****998.**********9543...8***********************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MDLATTSKSK KVRREKTPCL YKGIRMRAWG KWVSEIRVPR SGGRIWLGSY DAPDKAARAY  60
DAALYCIYGE CGRFNFPGDR RPVLPAGSTV SLSKEDIQHI AMNFASPQVT ESSRVSSTIK  120
AEVPSDKPTS SNVLGSKDMA SAYEVKGDSL APTCATGAGS ADSPEDFQLD DFLILDADWI  180
TDFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-41ERF family protein