PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G12150
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 190aa    MW: 21506.8 Da    PI: 10.2559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G12150genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-091566654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-.STCHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.as.kapskK.lsKaeiLekAveYIksL 54
                 + +Er+RR +++    +L +++P+  + + +sk  +s  + L +A  YIk+L
  Ro05_G12150 15 KTVERNRRIHMKGLCLKLASMVPPqHFkSSKSKDmMSQQSQLDLAASYIKQL 66
                 679*********************66675555558****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MKKCTSESSS KLDRKTVERN RRIHMKGLCL KLASMVPPQH FKSSKSKDMM SQQSQLDLAA  60
SYIKQLTERI ENLKERKEKE LRSQLGSSNK SSINNVDRAN KATVVGSRLP VVKLSESDSS  120
IEVMLISGLN KNFMFYEVIS VLEEEGAEVV SANFSTVGDK IFHTLHAQVK LSRVGVETTR  180
VWQRLQDLVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-22bHLH family protein