PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G12160
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 187aa    MW: 21263.4 Da    PI: 5.9259
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G12160genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-161259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l ++++ +G+g W+++ +  g++R++k+c++rw +yl
      Ro05_G12160 12 KGLWTAEEDRILTEYIRVHGKGKWNRVTKLTGLKRCGKSCRLRWMNYL 59
                     678*******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MEGGGRNHGY KKGLWTAEED RILTEYIRVH GKGKWNRVTK LTGLKRCGKS CRLRWMNYLS  60
PTVKRGDFSE EENDLIIRLH NLLGNRPSNS AELQQQPPLS NNGCDDEAAA AAGHGSDDGG  120
GVGFSGTWET MMMGSDNNYD QGSFWFYNNN EGDLNLYHPN YFMEPGLDHH HHHLHDYPFE  180
FLDDIGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.12e-42MYB family protein