PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G12173

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 490aa MW: 55778 Da PI: 6.0031

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G12173	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.8e-17	214	260	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l Ro05_G12173 214 KGQWTIDEDRVLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 260 799***************************.***********97 PP
2	Myb_DNA-binding	56.1	8.5e-18	266	308	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+ Ro05_G12173 266 KDTWSEEEDKVLIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 308 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MELTKLRENL ASQIPLLVPE NNSYMMKPCY MKDEFIPFDA SSSSKGYLQD FHHLDNQFHQ 60 YANGSSSNPM FGVQNPCFEP YYNDNAYIYD QGSPTDVNFY ECKPLNIAEN LGHGQVLDNF 120 QSGSGGYLNF PNHRSNPIGH MMEISHRSNN FLPLTNSQDI KPMSFVVPDE VSCINSENGY 180 YKRVGMNHKG TSRLSTIART GSTFKGRKKN HVVKGQWTID EDRVLIQLVE QYGVRKWSHI 240 AQMLPGRIGK QCRERWHNHL RPDIKKDTWS EEEDKVLIQA HAEIGNKWAE IAKRLPGRTE 300 NSIKNHWNAT KRRQYSKRKC RSKYPRGSLL QDYIKSLNLD ASPNTGRQRK SNNNNNNNSS 360 PVNHYNATSA STTTQAQTIC ENNRLVPNYD FSEKDPDFSF DENMFQEGCS IDSLLDDIPC 420 APVFGENGGN SFDGKMMDSS AQPVPVDDEK NFEMLDMQVD LGSAVMEGTE VEKELDLVEM 480 MSQVNEADDA

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MELTKLRENL ASQIPLLVPE NNSYMMKPCY MKDEFIPFDA SSSSKGYLQD FHHLDNQFHQ  60
YANGSSSNPM FGVQNPCFEP YYNDNAYIYD QGSPTDVNFY ECKPLNIAEN LGHGQVLDNF  120
QSGSGGYLNF PNHRSNPIGH MMEISHRSNN FLPLTNSQDI KPMSFVVPDE VSCINSENGY  180
YKRVGMNHKG TSRLSTIART GSTFKGRKKN HVVKGQWTID EDRVLIQLVE QYGVRKWSHI  240
AQMLPGRIGK QCRERWHNHL RPDIKKDTWS EEEDKVLIQA HAEIGNKWAE IAKRLPGRTE  300
NSIKNHWNAT KRRQYSKRKC RSKYPRGSLL QDYIKSLNLD ASPNTGRQRK SNNNNNNNSS  360
PVNHYNATSA STTTQAQTIC ENNRLVPNYD FSEKDPDFSF DENMFQEGCS IDSLLDDIPC  420
APVFGENGGN SFDGKMMDSS AQPVPVDDEK NFEMLDMQVD LGSAVMEGTE VEKELDLVEM  480
MSQVNEADDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-106	MYB family protein