PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G12575

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24692.9 Da PI: 6.7942

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G12575	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.5	1.3e-21	10	60	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ s rqvtfskRr+g++ KA+ S L daevavi+fs+tgklye+ss Ro05_G12575 10 KKIEDLSSRQVTFSKRRKGLFHKAKKWSSLYDAEVAVIVFSNTGKLYEFSS 60 68***********************************************96 PP
2	K-box	48.3	4.2e-17	106	171	23	88
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 L+++i +L + +++G++L+ LslkeL +Le+qL++++ ++ ++K+ ll e+ +++ +e+++ Ro05_G12575 106 LLQEQIASLNSDCSRMMGKELDGLSLKELDELEKQLNQGILSVTKRKDALLWEEFYRSKSQEQQTM 171 699********************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MGPPRRIEIK KIEDLSSRQV TFSKRRKGLF HKAKKWSSLY DAEVAVIVFS NTGKLYEFSS 60 TRMDHILSRY NNEGAGFPIE SPEKRRHEPA AKHEPSSCGT LSAIVLLQEQ IASLNSDCSR 120 MMGKELDGLS LKELDELEKQ LNQGILSVTK RKDALLWEEF YRSKSQEQQT MEMPSFILEY 180 NSNPLDRLFY ASSSNDISGC SESERSDQHI DLSLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	8e-38	MIKC_MADS family protein