PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G12604
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 26084.8 Da    PI: 10.5542
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G12604genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-121160351
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE.EEE-TTSEEEEEE- CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevav.iifsstgklyeyss 51
                 i+n+ +r v f kR+++++ K +EL +LC++ ++  ++  s +k++ ++s
  Ro05_G12604 11 ISNEPRRRVIFKKRKETLFRKLNELATLCGVIACAfVYDCSANKMHVWPS 60
                 9*****************************988761555899****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MAKYKTKLQL ISNEPRRRVI FKKRKETLFR KLNELATLCG VIACAFVYDC SANKMHVWPS  60
PEEANLVLEK FQNLPAKRQG QFMMDQEDFM KKRIFRLKRR IERQRMKNQA LEEKLFLNEY  120
LTGNNLHGSS PESLRKFGCL LDKRMNFIKN RIEFLESLNR GQVDIENVGS SDGAPLLVLA  180
YGLSGIGWLL PDGVVVRSVI KFFFLCVTVA VVLVWGLVWL RRLGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-28M-type_MADS family protein