PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G12609
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 223aa    MW: 24023.9 Da    PI: 7.4177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G12609genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13160204655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+       K + a++L +AveY+k Lq
  Ro05_G12609 160 SIAERVRRTRISDRIRKLQELVPNM-----DKTNTADMLDEAVEYVKFLQ 204
                  689*********************6.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MQPAPGGSGQ VSRGGGLSRF YSAPASWLEA LLEDEEEDPL KPTQCLTDLL ADNSGGPTLR  60
SSTAVGFASD TADPAGSFAR QNSSPADFIG NSSHGSEGYF SGFGIPASLD YVSNPNFSSV  120
SPSSSANKRV REVKMEEGGL EESATLRVRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL  180
VPNMDKTNTA DMLDEAVEYV KFLQKQIQPR IVMVVAARVS LKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-47bHLH family protein