PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G14457

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 195aa MW: 21453.2 Da PI: 8.1249

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G14457	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.1	4.2e-45	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el++++ Ro05_G14457 13 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDTAN 110 7*********************************************************************************************9987 PP DUF260 99 e 99 + Ro05_G14457 111 A 111 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MASSSSSSSY NSPCAACKFL RRKCMPGCIF APYFPPEEPQ KFANVHKIFG ASNVTKLLND 60 LLPHQREDAV NSLAYEAEAR VRDPVYGCVG AISFLQRQVQ RLQKELDTAN ADLIRYACNE 120 IITTPGVNSV IQPQMAPRRR PMDNHQFYQQ GSAAIPPAAN FQVPYNLPWN VDIHNRTSGD 180 HINEGGGGGG GEGRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	4e-75	LBD family protein