PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G14464

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 373aa MW: 41871.4 Da PI: 5.692

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G14464	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl Ro05_G14464 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.3	1e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ Ro05_G14464 67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPTTHKPLT DEELLKDDKT NVVNCSELNE SCSLPIMPSH EHHQELPMAN SSQGPTFLVS 180 DSNYFDGTST GISSTQASSR AAAAYDSLSY FEFQTSMDPS GYNNSDFVTS TQYHPPTTNS 240 IRPSFNYEAI IGYNSMPSLA NSDHGSMSGT DFSFSSSNSS TAGFHMSHNN NAVVENNAAA 300 FSWDMNTENK LESMFHQFDG PKSEELIMMK PNSSSWEEGQ LHQHQNSVDF SSYPLTSLSE 360 DLTGANFDVF QHI

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPLT DEELLKDDKT NVVNCSELNE SCSLPIMPSH EHHQELPMAN SSQGPTFLVS  180
DSNYFDGTST GISSTQASSR AAAAYDSLSY FEFQTSMDPS GYNNSDFVTS TQYHPPTTNS  240
IRPSFNYEAI IGYNSMPSLA NSDHGSMSGT DFSFSSSNSS TAGFHMSHNN NAVVENNAAA  300
FSWDMNTENK LESMFHQFDG PKSEELIMMK PNSSSWEEGQ LHQHQNSVDF SSYPLTSLSE  360
DLTGANFDVF QHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	5e-84	MYB family protein