PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G14474
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 336aa    MW: 38397.2 Da    PI: 8.3753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G14474genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.65.8e-10140228181
                  EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                  f+k+lt+sdv    +rl ++k+ +e+        +++   ++ ++ +d++g+++ ++++ +  + ++vlt+GWk F ++++L    Df +
  Ro05_G14474 140 FEKQLTNSDVKDDqSRLAMSKEDVEKRlipllneNEDLSLGIPVITYDSDGKEYPMTFKTWVAK-THVLTAGWKTFRHDHNLVeNQDFAT 228
                  99********988799********999***9977333347788999************999997.789**************83456655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MILGKSSRSI MPRLTNEEDG EMIKAVFNLC FMKLNVVESE IDAQIFEETN RKSLGQIRAG  60
AKRKALQIEE KEDESIVNVA QGLPRNQQQL QEGEAIYVAQ GLPEANPQVA HGLFYGNYAP  120
PNLPPVPSLQ QLIEICSEPF EKQLTNSDVK DDQSRLAMSK EDVEKRLIPL LNENEDLSLG  180
IPVITYDSDG KEYPMTFKTW VAKTHVLTAG WKTFRHDHNL VENQDFATVW MFRNAATGNL  240
CFVIQTRSKK PRPHLLIMMW GDHINTQKEF TVNMTLFNKN TYTFTRNAGV GVLLPRILPR  300
CHHHCHSRRV PIPITMWRVL ARTPPRQPKL PQFPSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-27B3 family protein