PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G14876
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25349.8 Da    PI: 6.1699
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G14876genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13.2e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien   rqvtfskRrng+lKKA+ELSvLCdaevaviifs++gklye+ss
  Ro05_G14876  9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSTRGKLYEFSS 59
                 79***********************************************96 PP
2K-box60.47.5e-21871731098
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++ ++e+ +++   + k+ie +++++R+llG++Les+s+ eL+q+e+qLe+sl+kiR++K  +l+eqie+l+  ek+l e+n +L +k 
  Ro05_G14876  87 DHDHMEHVNEDNGSIAKRIEFIESSKRKLLGDGLESCSIDELHQMENQLEQSLSKIRARK--MLREQIEKLKGEEKSLLEQNAKLMEKC 173
                  567899999999***********************************************9..69*********************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVAVIIFST RGKLYEFSSC  60
SSLNNTIDRF QKRMKDQEGL GGKAVRDHDH MEHVNEDNGS IAKRIEFIES SKRKLLGDGL  120
ESCSIDELHQ MENQLEQSLS KIRARKMLRE QIEKLKGEEK SLLEQNAKLM EKCGMQLIGP  180
PSNGEDDDDD NDDVECESPT ETMEVETELF IGPPKRRSAK KTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-69MIKC_MADS family protein