PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G14885
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 271aa    MW: 30719.1 Da    PI: 8.3116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G14885genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-1396148155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ +h  +Er+RR+++ + ++ Lr++lP       ++K s ++ + +A +YIk+Lq
  Ro05_G14885  96 KKIMHRDIERQRRQEMATLYASLRSHLPLeY---LKGKRSISDHVHQAANYIKHLQ 148
                  5789*************************77...9********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MDYIPSNILQ FDQALGHDGE LLQISCVPCV EHKIRENHVR PVPLSSDHSD KKEGPHHHDH  60
LMSHRQINFG QPKRKASLTF GEIDDNQNPK ENNKVKKIMH RDIERQRRQE MATLYASLRS  120
HLPLEYLKGK RSISDHVHQA ANYIKHLQKN IEELHDKRDE LKKSSNISGT CSTVVENSQC  180
PSIMGDSVIL VRPACIGVEV VVNTPLKQGI PLSRVIDILV GEGLSIVSCT SAKINQRLTY  240
TLKSEVSDER SIDIPELQHR LKKCTSEPGF K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-44bHLH family protein