PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G15597

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 346aa MW: 38864.7 Da PI: 6.5134

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G15597	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.5e-11	125	188	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-.STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas........kapskK.lsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P+++ +a+ + + a+i A++++k+L+ Ro05_G15597 125 QRMTHIVVERNRRKQMNEYLAVLRSLMPPSYvqrvsilfAADEEIgGDQASIIGGAINFVKELE 188 79*************************6669***99999999999999999999999985 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MALEAVVYPK EYNPFSYVCK DLYSLAASNW GYDFSLQEAQ DKALVGIFDH QNNHLDHQQG 60 SLLGNWDYQC SSSHSVLQNV KEWDPNSSPE AMETPPLPPP SSTTTGRRKR RRTRSNKNKE 120 EMENQRMTHI VVERNRRKQM NEYLAVLRSL MPPSYVQRVS ILFAADEEIG GDQASIIGGA 180 INFVKELEQL LQSMDGSHKR TTKPQQVPLA EFFTFPQFST PATTQCNSNS SSSSGGVHVN 240 DEPSMAPRSN SNNNQWAAAD IEVTMVDSHA NLKILSKKRP RQLLKMVAGF QSLRLSVLHL 300 NVTTVDEMVL YSVSVKIEEG CLLNTVDEIA AAVNEMLHRI QETSFS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MALEAVVYPK EYNPFSYVCK DLYSLAASNW GYDFSLQEAQ DKALVGIFDH QNNHLDHQQG  60
SLLGNWDYQC SSSHSVLQNV KEWDPNSSPE AMETPPLPPP SSTTTGRRKR RRTRSNKNKE  120
EMENQRMTHI VVERNRRKQM NEYLAVLRSL MPPSYVQRVS ILFAADEEIG GDQASIIGGA  180
INFVKELEQL LQSMDGSHKR TTKPQQVPLA EFFTFPQFST PATTQCNSNS SSSSGGVHVN  240
DEPSMAPRSN SNNNQWAAAD IEVTMVDSHA NLKILSKKRP RQLLKMVAGF QSLRLSVLHL  300
NVTTVDEMVL YSVSVKIEEG CLLNTVDEIA AAVNEMLHRI QETSFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	112	RKRRR
2	108	113	RKRRRT
3	126	137	RMTHIVVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-84	bHLH family protein