PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G15621
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 158aa    MW: 17001.8 Da    PI: 5.926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G15621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-161867255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ++kGVr++k +g+Wv+eIr+p   g +  r +lg+f tae Aa a++ a  +l++
  Ro05_G15621 18 KFKGVRQRK-WGKWVSEIRVP---G-TqDRLWLGSFSTAEAAAVARDVAYYCLRK 67
                 89******9.**********8...3.35*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MSYSSEDSSS PTNAGRQKFK GVRQRKWGKW VSEIRVPGTQ DRLWLGSFST AEAAAVARDV  60
AYYCLRKPST LEGLNFPTAL PCSVNQAVDK SPRSIQKAAS DAGMAVDAQL VNANGSWQPH  120
DGRQTNGSEP RGMQTGGCWE DAGESGGEAL SISIEDYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.15e-38ERF family protein