PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G16311
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 295aa    MW: 32945.5 Da    PI: 4.7767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G16311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08174221455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L++++P +    sk +  a +L + ++Y++sLq
  Ro05_G16311 174 SHSLAERVRRGKINERLRCLQDIVPGC----SKTMGMAVMLDEIINYVQSLQ 221
                  8*************************9....788*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MAQFSADLKP SFPFLDIEPS NMELINQYAD QFNHPSVLDY SSLNHFPSYM PFSSDNFFGN  60
LGPEFPGSLV ENFPAAGFAH QNNSNNNLQN DEASAAQCLI AAGNPEFQET KKGIATEISE  120
SSSGVSNPPV SKTGIKRKNS SGREKRVKIN NEEEDEKPKE VVHVRARRGQ ATDSHSLAER  180
VRRGKINERL RCLQDIVPGC SKTMGMAVML DEIINYVQSL QNQVEVSQSM DNDQFLSMKL  240
TAASSFHDFN SETDDAMETM QRAKELERVR IEAGYGGVVD SSFQYSSTNN YYWPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.13e-58bHLH family protein