PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G17872
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YC
Protein Properties Length: 123aa    MW: 13498.5 Da    PI: 7.5138
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G17872genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC109.42.1e-34231031998
        NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  h+lPlarikki+k + edvkmis eaP+++skacelfi elt rsw  + + krrtl+k d+a+av  tdifdflv  v +
  Ro05_G17872  23 HSLPLARIKKIMKkSGEDVKMISGEAPIVFSKACELFIEELTRRSWATTMQGKRRTLHKDDVASAVVATDIFDFLVSLVSE 103
                  99**********73579***********************************************************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MRQAGKYSGF MMCGGISGRT GPHSLPLARI KKIMKKSGED VKMISGEAPI VFSKACELFI  60
EELTRRSWAT TMQGKRRTLH KDDVASAVVA TDIFDFLVSL VSETASHSED VTEPEEMEKL  120
GSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-35NF-YC family protein