PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G18407
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 242aa    MW: 26688.3 Da    PI: 5.6557
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G18407genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-1860108355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Ro05_G18407  60 YRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALTIKG 108
                  9****998.**********843...6**********************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MEEEQSTTTT SSSSGSTPSA ECVAGKICKR SNWRVVENGS EKRAKSDGSE DQGSKQHPMY  60
RGVRMRQWGK WVSEIREPRK KSRIWLGTFA TPEMAARAHD VAALTIKGGS AFLNFPELAQ  120
ELPRPASSSP KDIQAAAAKA AALSYPSCSS HEAHEVEAEP ARDSSTSPDD HNDDTFYDLP  180
DLLLDVGQYH SDHEYYFSVA TWQLAGVEPY NASSKQEVKK VKRERNSNSG LEEAEIAKTE  240
GY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-52ERF family protein