PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G18736
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 231aa    MW: 24669.6 Da    PI: 9.2339
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G18736genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.92.2e-322579358
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 ++rY+eClkNhA+++Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e++
  Ro05_G18736 25 TIRYRECLKNHAVNIGGHALDGCGEFLAA-GDEGTLDALKCAACNCHRNFHRKEPA 79
                 78**************************9.999********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGPTSGGGGE STARKRGTTV STVSTIRYRE CLKNHAVNIG GHALDGCGEF LAAGDEGTLD  60
ALKCAACNCH RNFHRKEPAE GGGGALHPHH HNQLAQQPFS AYYRHPYPPP PSGYLHLTPA  120
QQPYRPLALP AAASGGGGGG SHSREEVEDV SNPSSSGGGG GSGVGLLKKR FRTKFTAEQK  180
EKMVEFAEKV GWRIQKHDEA AVEEFCAESG VKRQVLKVWM HNNKHTIGKK P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.18e-72ZF-HD family protein