PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G19371
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20990.4 Da    PI: 5.698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G19371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.88.7e-1124571548
                 HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklye 48
                  R++ i KKAeELS+LC+++v +i +  + ++ e
  Ro05_G19371 24 DRKKNINKKAEELSTLCGVDVGLIFYQRQSTVAE 57
                 6************************998888754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MEDMEPQRNL ELSSSKSDRK KVRDRKKNIN KKAEELSTLC GVDVGLIFYQ RQSTVAETWP  60
EDPAQLERII NMYKAKRGAE TKGLHGGHEN VNNSDEEREI LYPTWDDRFD YFSEDELSTL  120
VASLDAKLEA STNRNVDSLS KKSCNGFVTP KKKTSNTIAL DHHHMEDSNL NMVPFREING  180
LDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-12M-type_MADS family protein