PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G20389
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 311aa    MW: 36128.5 Da    PI: 8.7764
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G20389genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS177.11.3e-5479310134362
         GRAS 134 sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                  +Rp+ pp+lRiT+++ p++g   +e++eetg+rLak+ +++ vpfef++ +ak+++++++++Lr+++++ ++Vn+ ++l ++ld ++  +++rd+vLk
  Ro05_G20389  79 KRPGRPPKLRITAIELPKPGfqPTERVEETGRRLAKYSARFSVPFEFHI-IAKKWKTVRFDNLRIDKNDLIVVNCLHRLNHILDVTMMGKNPRDAVLK 175
                  79*****************9999*************************9.7*********************************************** PP

         GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                   +k+++P+++++      +ns+ Fl+rf +al ++ alfd  ea++p e+++r +  r+ +gr+++n+v ceg e +er et++kW+ r  +a Fk++
  Ro05_G20389 176 SIKKINPEIFIHGVVHGAYNSPFFLTRFKHALLHFDALFDVCEANIPCENQQRLFFKRAGFGRDVMNIVVCEGLEIVERPETYKKWKVRNVRARFKQL 273
                  ************************************************************************************************** PP

         GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslv.lgW 362
                  pl+++  k++ ++ + ++  + + ++e+ +s   l W
  Ro05_G20389 274 PLDQELLKKVTTMSKLMDyHNDFCIDEDGQSDPyLIW 310
                  *************999998888*99999655332666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MTIFLSSFGD AYKSANRSEG KKHQQREDGQ CLEEWRSIKQ SVAFSVDDDF EPQEMFDKAV  60
LFEGVNHDSS GESFKAEGKR PGRPPKLRIT AIELPKPGFQ PTERVEETGR RLAKYSARFS  120
VPFEFHIIAK KWKTVRFDNL RIDKNDLIVV NCLHRLNHIL DVTMMGKNPR DAVLKSIKKI  180
NPEIFIHGVV HGAYNSPFFL TRFKHALLHF DALFDVCEAN IPCENQQRLF FKRAGFGRDV  240
MNIVVCEGLE IVERPETYKK WKVRNVRARF KQLPLDQELL KKVTTMSKLM DYHNDFCIDE  300
DGQSDPYLIW G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-77GRAS family protein