PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G20554
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 374aa    MW: 41086.9 Da    PI: 7.8857
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G20554genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.31.4e-31126181359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +++YkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e 
  Ro05_G20554 126 SIKYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 181
                  689*************************9.999********************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MELSSHQEGQ IPISIPIPIP INTSYGGGGH GHGHMIHHHH HEPAAPHTHI HSHNNHIIPS  60
SVPVATPPPP PQNQIPTSIN NNGSSMPKTT SLLGQEGEDE EEEEHVNHVK VASYNNTSNS  120
KKVVNSIKYK ECLKNHAAAM GGTATDGCGE FMPSGEEGTI EALNCSACNC HRNFHRKEIE  180
GDHGMSSSWD NVNNSSRVGT SVGRKFLLGH PNGHKNMNIL SPEALGFHTA ANPIGGFLPS  240
RTAPHHPHHQ MIMSYNNNMG MGGMMGSQLP SESDEQDQDQ MHHHGHGGGV HVASRAPVQL  300
VKKRFRTKFT QEQKEKMFNF AEKVGWKIQK QEESVVQNFC HEIGVKRRVL KVWMHNNKHN  360
LAKNKSQAPP STTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.11e-59ZF-HD family protein