PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G20765

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 201aa MW: 22999.5 Da PI: 4.7323

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G20765	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.9	1.1e-37	8	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ k+ e k+wyf+s+r +nr+t++gyWk g++++v+++ Ro05_G20765 8 LPPGFRFFPTDEELVVHFLQRKAALLPFHP-DVIPDLDLYPYDPWELNGKALCEGKQWYFYSRRT--------QNRVTSNGYWKPLGTEEPVITSssa 96 79***********************999.99**********97777789***984........58*************998777 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg+k+ + fy g+ap+g kt+W+mheyrl Ro05_G20765 97 tSSDKVGIKRYFGFYVGEAPSGIKTNWIMHEYRL 130 66677*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MGDNHFQLPP GFRFFPTDEE LVVHFLQRKA ALLPFHPDVI PDLDLYPYDP WELNGKALCE 60 GKQWYFYSRR TQNRVTSNGY WKPLGTEEPV ITSSSATSSD KVGIKRYFGF YVGEAPSGIK 120 TNWIMHEYRL SAVSDACSSS STTRSSKRRG HRKTVNEYSG YVLCRVYERD EDEGDDDGTE 180 LSCLDEVFLS LDDLDEISLP N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-73	NAC family protein