PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G21769
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 112aa    MW: 12953.3 Da    PI: 10.0259
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G21769genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.19.6e-081761851
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE- CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviif.sstgklyeyss 51
                  r  tf  R++ +l   eE  +LC++ ++v ++ s+++k+  ++s
  Ro05_G21769 17 TRRATFNMRKANLLRELEEFTTLCGIIACVFVYdSTSNKMDVWPS 61
                 5889**************************887578899999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MVKSKTKPEL ISHHEPTRRA TFNMRKANLL RELEEFTTLC GIIACVFVYD STSNKMDVWP  60
SPQAAFYLLV LMLKRELEAV RKKNQALERK QLLIEYLKGK SVHGLSLKDC QS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.18e-12M-type_MADS family protein