PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G21778

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 26616.8 Da PI: 10.4044

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G21778	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85	4.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s Ro05_G21778 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59 8***********************************************86 PP
2	K-box	86.4	5.8e-29	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+a L+++++nLq+ +R+++Ge+L+ Ls+k+Lq+Le+qLe+sl+++R kK++ll+++i++l +k + +++en +L kk+ Ro05_G21778 81 NPASEVKLWQREAAMLRQQLHNLQERHRQMMGEELSGLSVKDLQNLENQLETSLRSVRMKKDQLLMDEIQDLNRKGNLIHQENVELYKKV 170 67788999*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFAST 60 SIKSVIERYS KAKEEHNQLG NPASEVKLWQ REAAMLRQQL HNLQERHRQM MGEELSGLSV 120 KDLQNLENQL ETSLRSVRMK KDQLLMDEIQ DLNRKGNLIH QENVELYKKV NLIRQENMEL 180 YKKTTTTLEK KVHHIRKMLL EFIKNKAGGY KFTFYHRNMI EEPQNLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-100	MIKC_MADS family protein