PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G22454
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27998 Da    PI: 9.733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G22454genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.1e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++nrqvtf+kRrng+lKKA+ELS+LC+aeva+i+fss+g+lyeys+
  Ro05_G22454  9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCEAEVALIVFSSRGRLYEYSN 59
                 79***********************************************95 PP
2K-box105.94.9e-35811748100
        K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +e +a+++qqe+akL+ +i++Lq+++Rhl+G++L++L++keL+qLe++Le++l++iRskK+e+ll++ie+lqk+e el++en   r+k++e
  Ro05_G22454  81 TtITEINAQYYQQESAKLRHQIQMLQNSNRHLMGDSLSNLTVKELKQLENRLERGLTRIRSKKHEMLLAEIEYLQKREVELENENVLVRAKIAE 174
                  3488999************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCE AEVALIVFSS RGRLYEYSNN  60
NSIRNTIERY KKACSDSSGA TTITEINAQY YQQESAKLRH QIQMLQNSNR HLMGDSLSNL  120
TVKELKQLEN RLERGLTRIR SKKHEMLLAE IEYLQKREVE LENENVLVRA KIAELERLQH  180
ADMVSGDQDL ELNAIQALVS RNFFASTMIE GEASYSQPEK KFLNLGAGKG LVKQGKTSSS  240
FGYVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-107MIKC_MADS family protein