PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G22565
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 93aa    MW: 10904.4 Da    PI: 7.3654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G22565genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-074078444
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +++eE++l+ +  ++ G + W++Ia +++ gR ++++  +w
      Ro05_G22565 40 MSEEEEDLINRMYRLVGDR-WELIAGRIP-GRKAEEIERFW 78
                     79***************99.*********.*******9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    
MDNRLCSLRQ PQTTNSSTSS SFNSEGLAEV SSTEWKLIKM SEEEEDLINR MYRLVGDRWE  60
LIAGRIPGRK AEEIERFWII KRMKQNIHSP SFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.19e-27MYB_related family protein