PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G22829
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 151aa    MW: 17578.1 Da    PI: 10.011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G22829genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.31.7e-4561301128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeel+ +yLk kv + +l++ +vi+evd+ k++Pwd+p  v   ++e yfFs r+ ky++g+r nrat+sg W+a+g +k+++++ ++
  Ro05_G22829   6 LPPGFRFHPTDEELIFQYLKSKVFSCSLPT-RVISEVDVGKFDPWDFPGDV---QEEKYFFSIREAKYRNGNRLNRATASGHWRASGLEKQIVTSmGN 99 
                  79***************************9.99***************554...5689**********************************999788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLvfy+g++++g+ tdW+mheyrl
  Ro05_G22829 100 QVVGIKKTLVFYRGKTRRGTMTDWFMHEYRL 130
                  89***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MEKLKLPPGF RFHPTDEELI FQYLKSKVFS CSLPTRVISE VDVGKFDPWD FPGDVQEEKY  60
FFSIREAKYR NGNRLNRATA SGHWRASGLE KQIVTSMGNQ VVGIKKTLVF YRGKTRRGTM  120
TDWFMHEYRL VLAEDKNNSQ VSFCSGVFHK N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-64NAC family protein