PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G24068

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 717aa MW: 82408 Da PI: 5.6488

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G24068	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.3e-08	385	433	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqk 46 +WT +Ed+ +++ v++ G ++W Ia+ + ++Rt+ qc r+q Ro05_G24068 385 EPWTVDEDKNILEIVQEKGVNDWIDIAASLLvrkgTNRTPFQCLARYQR 433 58*********************************************96 PP
2	Myb_DNA-binding	37.5	5.5e-12	443	485	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+++d +l av+ +G g+W ++a+ + gRt+ qc +rw k Ro05_G24068 443 EWTKDDDAKLGSAVEAFGEGDWQSVASSLE-GRTGTQCSNRWKK 485 7***************************.*********98 PP
3	Myb_DNA-binding	40.2	8.1e-13	494	539	1	46
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 +g+WT eEd +l a +Gg +W++I++ ++ gRt qc++r+ + Ro05_G24068 494 KGKWTLEEDTRLTVAQMFFGGSkNWNKISQFVP-GRTQAQCRDRFVN 539 79****************99*******.********976 PP
4	Myb_DNA-binding	43.1	1e-13	548	591	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd l a++++G W++++++++ Rt+++c rw + Ro05_G24068 548 GEWTEEEDSMLRAAIAEHGHC-WSKVSSCVP-QRTDNMCWRRWKVL 591 68***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MYPLTENEKE EVSCGEEEED DKGFNEDMEA LRHACMLTGR DPDDIDKEEE DDDEGFNEDL 60 EALRRACMLP GGDPSDIDKD DDIDEDLELL NKIKSQFSDS LTCKPLSLST LPPATVYDDY 120 QTLLAIQKRF AAYDKDTQDN SPEQIDPSCF NEEISTTDTE QGQPSTSENS GLFPKSALAF 180 LDAINKNRAC QKLLQSKLIH IQAKIEENQK LKQRVKILRD FQLHCKRRTG EALSQKKDPR 240 VQLILTKRPR GDSIKPPHDD EDGAMSYGQE QNSHVANYRM MALKKFPDRK NWSEVEKKDL 300 QKGIRQQFQK MVLQSSYSEI QNSYNDDIDN ILSSIKDVEI TPYSIREFLP KVNWRQLAAM 360 YVPGRSGEEC RARWLNSEDP LINHEPWTVD EDKNILEIVQ EKGVNDWIDI AASLLVRKGT 420 NRTPFQCLAR YQRSLNASIL KHEWTKDDDA KLGSAVEAFG EGDWQSVASS LEGRTGTQCS 480 NRWKKALHPS RTRKGKWTLE EDTRLTVAQM FFGGSKNWNK ISQFVPGRTQ AQCRDRFVNS 540 LEPSLKFGEW TEEEDSMLRA AIAEHGHCWS KVSSCVPQRT DNMCWRRWKV LFPQQVLFLR 600 QEKRIRNSAL IRNFVDREEE RPALGPNDFL LPDNTSTHPR KTGRGSQSGN KKNVSSNCQV 660 PWSDHEQVHN SNEVEMCDGD DASKKKKKVL KQRRRRHNCT EPTRVSQNGM DGSRGEY

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MYPLTENEKE EVSCGEEEED DKGFNEDMEA LRHACMLTGR DPDDIDKEEE DDDEGFNEDL  60
EALRRACMLP GGDPSDIDKD DDIDEDLELL NKIKSQFSDS LTCKPLSLST LPPATVYDDY  120
QTLLAIQKRF AAYDKDTQDN SPEQIDPSCF NEEISTTDTE QGQPSTSENS GLFPKSALAF  180
LDAINKNRAC QKLLQSKLIH IQAKIEENQK LKQRVKILRD FQLHCKRRTG EALSQKKDPR  240
VQLILTKRPR GDSIKPPHDD EDGAMSYGQE QNSHVANYRM MALKKFPDRK NWSEVEKKDL  300
QKGIRQQFQK MVLQSSYSEI QNSYNDDIDN ILSSIKDVEI TPYSIREFLP KVNWRQLAAM  360
YVPGRSGEEC RARWLNSEDP LINHEPWTVD EDKNILEIVQ EKGVNDWIDI AASLLVRKGT  420
NRTPFQCLAR YQRSLNASIL KHEWTKDDDA KLGSAVEAFG EGDWQSVASS LEGRTGTQCS  480
NRWKKALHPS RTRKGKWTLE EDTRLTVAQM FFGGSKNWNK ISQFVPGRTQ AQCRDRFVNS  540
LEPSLKFGEW TEEEDSMLRA AIAEHGHCWS KVSSCVPQRT DNMCWRRWKV LFPQQVLFLR  600
QEKRIRNSAL IRNFVDREEE RPALGPNDFL LPDNTSTHPR KTGRGSQSGN KKNVSSNCQV  660
PWSDHEQVHN SNEVEMCDGD DASKKKKKVL KQRRRRHNCT EPTRVSQNGM DGSRGEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-169	MYB family protein