PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G24442
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 182aa    MW: 20122.1 Da    PI: 8.925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G24442genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.7e-14911623298
                  --SEEEEEETTS-EEEEEE.....EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  32 esktltledesgrsWevkliy...rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++kt++led++g+sW v l++    kk gr      lt+GW + + an++  gD+++F+l+++s   +++++fr
  Ro05_G24442  91 NKKTVKLEDPTGKSWPVSLCVskyYKKNGRlyesLDLTAGWTQVCVANKISPGDTIIFELVKQSV--MKIHIFR 162
                  4579***************7766555555567778899*********************987554..4888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MCDRLTNVIL EVLVDNAGYD GESKFNVTIY DRSACEKDVE VAKTRSNSSV SLGSNGNQAQ  60
VKEEVVDLET ENYYNNKGFP KELGVAKSLM NKKTVKLEDP TGKSWPVSLC VSKYYKKNGR  120
LYESLDLTAG WTQVCVANKI SPGDTIIFEL VKQSVMKIHI FRVGRMGGKG CSVRLVAPNV  180
KS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-10B3 family protein