PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G24926

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 285aa MW: 32359.3 Da PI: 8.0743

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G24926	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.2e-33	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Ro05_G24926 27 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 81 79****************************************************8 PP
2	Myb_DNA-binding	68.5	1.1e-21	29	80	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++++vdav++lGg+ t+k++ r mg kg+tl+++ks++qky+ Ro05_G24926 29 RLRWTPDLHDRFVDAVTKLGGPdkaTPKSVLRLMGlKGLTLYHLKSHLQKYR 80 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MEMNYNNYGG EESCPYENGV MMTRDPKPRL RWTPDLHDRF VDAVTKLGGP DKATPKSVLR 60 LMGLKGLTLY HLKSHLQKYR LGQQARKQNS AEQGRENNGD SFVHFSNNHS TGSTTKSSRG 120 NAEQGTIPLS DALKCQIEVQ NRLQEQLEVQ KKLQMRIEAQ GKYLQAILEK AKKGLSVDMK 180 GPITVEATRA QLTDFNLALS HFMENMSEEE RRGNIIEMNE AYKKSNGSTF QIYEEGNIEE 240 NKDSKLKVER GSIHFDLNTK GSYDYVGTNG TELEPRCFRL QDSTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	6e-80	G2-like family protein