PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G26265

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 730aa MW: 83392.8 Da PI: 7.986

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G26265	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.9	5e-16	115	228	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........................tekerr....traetrtgCkaklkvkk 70 Y Y++ vGFs+r+ k + r+g +++r +vCsk+g + + kk+ + + tr+ C a ++v Ro05_G26265 115 LYTYYSHVVGFSTRRYKLDRD-RDGVVIRRGWVCSKQGLAPDIKKRntnkggkhmgsetknnkkmnrkqqqK----YvaprGTRYTRVCCPAAFTVIY 207 79*************9998.9999********998887778999******999887544322....1444477899***99988 PP FAR1 71 ek.dgkwevtkleleHnHela 90 +k +g+++v+k++ eHnHela Ro05_G26265 208 SKeRGVYHVSKFVAEHNHELA 228 888**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MDTDECGLRF SDSVYYCSFS SDEDDPEDYA SAGVFDNECK DTSTRECTDS RTRQPVDRQS 60 ADKNGTPMQH DQYREAAESD VSGGYVRFNG KNIKKLEMKD LENVDFATVD EAEKLYTYYS 120 HVVGFSTRRY KLDRDRDGVV IRRGWVCSKQ GLAPDIKKRN TNKGGKHMGS ETKNNKKMNR 180 KQQQKYVAPR GTRYTRVCCP AAFTVIYSKE RGVYHVSKFV AEHNHELATP EEEWEEAWDY 240 IVVSNGLENN LWVKSLYNKR ERWAEAFFRG KFFGGMCSTQ RCEGMHSKLK KEIGRYTRLC 300 EVMPRLEKTL GRIRNRVLAD NFRSKNCVRV YDTHMRGIEE QVYKVFTDDI FVMIKSQINF 360 EKMFVISRRV PFAINDSVVF YVSQYDMPER KWCVEYQING GKTSLCCSCK QYESDGIPCA 420 HIFCVMKCEM MTDYPKSMVM KRWTKEAGET TIPPKIPRKY LDKAAQVSRY SALISQCSQA 480 CLNYSFSDEG FNAAMIEFGR MNEESMKYKD ANQEDIPNVP DSNPNVLRDP PFAKTKGMHT 540 NRTNNIESSK TEQRGCGICG VLGHNRCTCD VGGENATDGV NHGSVERRRV GEGETQREED 600 MINNNTYGRQ QSCVQPSAPT CTTPTSYDLS HPPLQRYSMS RELYLNIGPT NVIYEQTGGF 660 QTLLQQMSPS IGVPAVHLQW KQGEHVNPHL GHSHLAPVPP FFSFSQGSTP GPLFSTPSDV 720 QRPHSQPNPK

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MDTDECGLRF SDSVYYCSFS SDEDDPEDYA SAGVFDNECK DTSTRECTDS RTRQPVDRQS  60
ADKNGTPMQH DQYREAAESD VSGGYVRFNG KNIKKLEMKD LENVDFATVD EAEKLYTYYS  120
HVVGFSTRRY KLDRDRDGVV IRRGWVCSKQ GLAPDIKKRN TNKGGKHMGS ETKNNKKMNR  180
KQQQKYVAPR GTRYTRVCCP AAFTVIYSKE RGVYHVSKFV AEHNHELATP EEEWEEAWDY  240
IVVSNGLENN LWVKSLYNKR ERWAEAFFRG KFFGGMCSTQ RCEGMHSKLK KEIGRYTRLC  300
EVMPRLEKTL GRIRNRVLAD NFRSKNCVRV YDTHMRGIEE QVYKVFTDDI FVMIKSQINF  360
EKMFVISRRV PFAINDSVVF YVSQYDMPER KWCVEYQING GKTSLCCSCK QYESDGIPCA  420
HIFCVMKCEM MTDYPKSMVM KRWTKEAGET TIPPKIPRKY LDKAAQVSRY SALISQCSQA  480
CLNYSFSDEG FNAAMIEFGR MNEESMKYKD ANQEDIPNVP DSNPNVLRDP PFAKTKGMHT  540
NRTNNIESSK TEQRGCGICG VLGHNRCTCD VGGENATDGV NHGSVERRRV GEGETQREED  600
MINNNTYGRQ QSCVQPSAPT CTTPTSYDLS HPPLQRYSMS RELYLNIGPT NVIYEQTGGF  660
QTLLQQMSPS IGVPAVHLQW KQGEHVNPHL GHSHLAPVPP FFSFSQGSTP GPLFSTPSDV  720
QRPHSQPNPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1 family protein