PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G26652
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARR-B
Protein Properties Length: 619aa    MW: 69293.6 Da    PI: 6.5412
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G26652genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like871.8e-27375429156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++
  Ro05_G26652 375 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKTEGLTRHNVASHLQKYRMH 429
                  5689*****************.********************************96 PP
2Myb_DNA-binding43.66.8e-14378427248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e+++++v+av+qlG +   +++I + m  +g+t+ ++ s++qky+
      Ro05_G26652 378 VDWTPELHKKFVHAVEQLGVDqaIPSRILELMKtEGLTRHNVASHLQKYR 427
                      57***********************************************7 PP
3Response_reg29.92.8e-11831891109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSE.HHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmd.GlellkeireeepklpiivvtahgeeedalealkaGa 94 
                   vl+ d++ +    +r+ le  +y +v+++ + +eal  +  + + +++ ++ ++ +++d  +++l+   +++ +lpii+ +     +++ +++ +Ga
   Ro05_G26652  83 VLLLDKDTSSSAEIRSKLEAMDY-IVTTFYNETEALSAFscNPESFHVAIVEVNASNVDwVFQFLE---TAK-DLPIIMTSNIHCLNTMMKCIALGA 174
                   7999*******************.***************655566************651555554...444.799999998888************ PP

                   SEEEESS--HHHHHH CS
  Response_reg  95 kdflsKpfdpeelvk 109
                    +fl Kp ++++l++
   Ro05_G26652 175 VEFLRKPLSEDKLRN 189
                   ************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    
MVTVQKSKKA PLYLSSFPNA AKEVEEDLNG GGEKKPLLYS FEPSLRWNKI QHLHGLRNDA  60
KSAMVCTAND LEGWKDFPKG LRVLLLDKDT SSSAEIRSKL EAMDYIVTTF YNETEALSAF  120
SCNPESFHVA IVEVNASNVD WVFQFLETAK DLPIIMTSNI HCLNTMMKCI ALGAVEFLRK  180
PLSEDKLRNI WQHVVHKAFN TGEKGVSESV KPVKESVVPM LQPKLENEPP KCKISIETEN  240
VSRALEHDHE QSTGSDKYPA PSTPQIKQGS RLLDDGDCQD QTNCLSEKES GEHDGESKSV  300
ETTCGNAEDT LQISEPQMPE KIAVKQEKDS ADVSKNDINL SQPLIRDSTN DTVCATENLT  360
KASGLNHSYK SSRKKMKVDW TPELHKKFVH AVEQLGVDQA IPSRILELMK TEGLTRHNVA  420
SHLQKYRMHK RHILPKDEDR RLLHPRDPTQ MSYYPHKPIM AFPPYHYNNA VSMPSVYPMW  480
GQPTGHPANI QMWGPPSYPP WQPSESWHWK PSYPGLHADA WGCPVMPQPL QGGYSPYPQI  540
AAGVHNTNVV DNGCSIPLDS SELHPSEEII DKVVKEAMSK PWLPLPLGLK LPSTEGVLAE  600
LSRQGICNIP PQNNGSSFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-144ARR-B family protein