PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G26898

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 211aa MW: 23674.7 Da PI: 9.0073

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G26898	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.9	3.7e-25	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien rqvtf+kRr+g+lKKA+ELSvLCda++ v+i+ss+gkl+e Ro05_G26898 9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFEL 57 68********************************************996 PP
2	K-box	61.4	3.5e-21	84	175	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + e+++ + ++e++ Lk+eie Lq+ +R + G + +++sl eLq Le++Le + ++Rs K+++ll++i+ l++ e l +nk+L+ k+ee Ro05_G26898 84 AMETQTVEAKKEINLLKQEIEILQKGLRYMFGGGAGTMSLDELQVLEKHLEIWIYHVRSAKMDILLQEIQLLRNSEGILTAANKYLQDKIEE 175 567888999********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIYSS HGKLFELATK 60 GTMQGLIEKY MKMKPARVPQ AETAMETQTV EAKKEINLLK QEIEILQKGL RYMFGGGAGT 120 MSLDELQVLE KHLEIWIYHV RSAKMDILLQ EIQLLRNSEG ILTAANKYLQ DKIEENSGVT 180 NLIPMASDSP YPLTIPSDDI NSILGNNFGL N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	1e-81	MIKC_MADS family protein