PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G27840
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 163aa    MW: 19027.3 Da    PI: 7.8911
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G27840genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.81.1e-1074137264
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCka 64 
                  f ++Y+  + F++rk+k+ +   +g+it+r++vCsk+gkr++++ +  ++k+r ++ etr +C  
  Ro05_G27840  74 FCDDYSLAIDFNIRKNKKDTG-VDGNITRRRWVCSKQGKRDKKRYDnpNKKKRARKRETRENCLG 137
                  7789***********998776.9999***************999887788888899999***975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MKSEDVTMEF VEVQQSDEDY FGTSMSQCES DMEQLLERSA RSFPIDINGK KYEDLTLKDF  60
QNTIFKTKEE AEDFCDDYSL AIDFNIRKNK KDTGVDGNIT RRRWVCSKQG KRDKKRYDNP  120
NKKKRARKRE TRENCLGIVI RDPEVAKTKV KNDNATVDGD KST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122151KKKRARKRETRENCLGIVIRDPEVAKTKVK