PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G30743

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 676aa MW: 76852.2 Da PI: 6.4473

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G30743	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ +++ g+ R++k+c++rw +yl Ro05_G30743 14 RGLWSPEEDEKLLRYITTYGYGCWRNVPEQAGLQRCGKSCRLRWVNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	47.3	4.7e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++E++l+++++ G++ W+ Ia++++ gRt++++k++w+++ Ro05_G30743 67 RGGFTPDEEKLIIRLHGAVGNR-WAHIAKCLP-GRTDNEIKNYWNSW 111 788*****************.*****.**********98 PP
3	Myb_DNA-binding	53.2	6.8e-17	350	397	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl Ro05_G30743 350 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 397 788*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MGHHYCCQQR KVKRGLWSPE EDEKLLRYIT TYGYGCWRNV PEQAGLQRCG KSCRLRWVNY 60 LRPDIKRGGF TPDEEKLIIR LHGAVGNRWA HIAKCLPGRT DNEIKNYWNS WIKKKLEKPS 120 SPITTSVYHH QQYSQIVSLN PNNQDHFVNQ TFIARPSPYP PFMFEAASID ESTTHANNIN 180 INVQADHWHF PLDVNSNNLR AWILDQHNVQ ALLSTGPFTN MDAKLLMPSL IGSTSTAINA 240 NMVPVEVEPC RNVDEEGDIS MECLQSHQDL NALVHFRQQQ PCSTFHFCWD SVEGQHGGHE 300 ISVPSSSNMG ANIIGLRYKK AGEEERRIVA TVDQAIMGHH SCCNQQKVKR GLWSPEEDEK 360 LIRYITTHGY GCWSEVPEKA GLQRCGKSCR LRWINYLRPD IRRGRFTPEE EKLIINLHGV 420 VGNRTDNEIK NYWNSWIKKK IRKPSTPSST TSLTTSTAPI VQMAYNDSST CQQLDFVNQD 480 YIATKPQVQD QTLFSSTCPM FMFDTTAIDQ LAVENYNARV ELFQDVVSTV GFGNSDVPWN 540 LNQHQVQALP PPPPPAMDIN YLPPLIENMD NMLPNMDDHH QVLQSNNCNN MDIEEGDHHH 600 HQDQMAELNE WVASQQQYSS SCSNFLFWDE MNSVVDDHQG TGSINIVGDH HNVIVPATSS 660 TTGANAVLLS SFPSSL

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MGHHYCCQQR KVKRGLWSPE EDEKLLRYIT TYGYGCWRNV PEQAGLQRCG KSCRLRWVNY  60
LRPDIKRGGF TPDEEKLIIR LHGAVGNRWA HIAKCLPGRT DNEIKNYWNS WIKKKLEKPS  120
SPITTSVYHH QQYSQIVSLN PNNQDHFVNQ TFIARPSPYP PFMFEAASID ESTTHANNIN  180
INVQADHWHF PLDVNSNNLR AWILDQHNVQ ALLSTGPFTN MDAKLLMPSL IGSTSTAINA  240
NMVPVEVEPC RNVDEEGDIS MECLQSHQDL NALVHFRQQQ PCSTFHFCWD SVEGQHGGHE  300
ISVPSSSNMG ANIIGLRYKK AGEEERRIVA TVDQAIMGHH SCCNQQKVKR GLWSPEEDEK  360
LIRYITTHGY GCWSEVPEKA GLQRCGKSCR LRWINYLRPD IRRGRFTPEE EKLIINLHGV  420
VGNRTDNEIK NYWNSWIKKK IRKPSTPSST TSLTTSTAPI VQMAYNDSST CQQLDFVNQD  480
YIATKPQVQD QTLFSSTCPM FMFDTTAIDQ LAVENYNARV ELFQDVVSTV GFGNSDVPWN  540
LNQHQVQALP PPPPPAMDIN YLPPLIENMD NMLPNMDDHH QVLQSNNCNN MDIEEGDHHH  600
HQDQMAELNE WVASQQQYSS SCSNFLFWDE MNSVVDDHQG TGSINIVGDH HNVIVPATSS  660
TTGANAVLLS SFPSSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	1e-72	MYB family protein