PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G30826
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family YABBY
Protein Properties Length: 181aa    MW: 20088.7 Da    PI: 7.538
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G30826genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY72.61.3e-221459247
        YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtslls 47
                 d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll 
  Ro05_G30826 14 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLP 59
                 577899**************************************96 PP
2YABBY71.62.8e-22106141135170
        YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  +eiqrik+ nPdishreafsaaaknWahfP+ihfgl
  Ro05_G30826 106 DEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 141
                  79********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MSSSNSAAST LSLDHLPPSE QLCYVHCNIC DTVLAVSVPC TSLFKTVTVR CGHCTNLLPD  60
QEIPMNPSPN FLMNNQTSNL NDFAVRPRGG IADELPRPPV INRRTDEIQR IKSVNPDISH  120
REAFSAAAKN WAHFPHIHFG LMPDQTTAKK TNVRQQEAGE DVLMKDHNGF FAAANNNVRR  180
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-50YABBY family protein