PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G31063

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 301aa MW: 34793.5 Da PI: 6.2569

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G31063	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.4e-18	94	154	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t qle+Le+ + + n +p +++ +e++ +l ++te+++++WFqNrRa+ k+ Ro05_G31063 94 RQRWTPTCVQLEILERIYDEaNGTPGKHRVKEITVELsqhgQVTETNIYNWFQNRRARSKR 154 89***************99************************************97 PP
2	Wus_type_Homeobox	90.5	1.7e-29	93	156	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt Q++iLe++y+++ tP k+++++it eL+++G+++++N+++WFQNr+aR+++kq Ro05_G31063 93 TRQRWTPTCVQLEILERIYDEANGTPGKHRVKEITVELSQHGQVTETNIYNWFQNRRARSKRKQ 156 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MEWQSHRHQR RVLAMQMEGP RTQNPDGFCG KVMTDDQVDQ LRKQIAVYAV ICEQLVDMHK 60 AFTAQHHDHL SGTKMESVYG DSLIASGGNK VTTRQRWTPT CVQLEILERI YDEANGTPGK 120 HRVKEITVEL SQHGQVTETN IYNWFQNRRA RSKRKQSVPA RNIAESDLEP EVVSPKDKKT 180 KPEDMYLQSP DTEIEPDVES PTSLESEEGG RLIAPQEACL RTTEAPQEAT TRKMEMVADD 240 DLKMRMYERA RMAVEVCDQE LLDKTRKFEG LMLERHRKKL QIQELEKIVR LKLAEADMFQ 300 L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	156	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-54	WOX family protein