PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G31192
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family TCP
Protein Properties Length: 214aa    MW: 23841.8 Da    PI: 7.775
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G31192genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP61.72.8e-191562072172
          TCP  21 RvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 
                   +Rlsa++a+rf+d+ d LG+d++sk+i+WL+ +ak+ai +l ++ ++++++
  Ro05_G31192 156 EIRLSAQTAIRFYDVEDHLGYDRPSKAIDWLIDKAKAAIEALDDSYATHHKS 207
                  79****************************************9995555533 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
NLLLDNDKGI LKIADLELGC AFTVQNLTRQ GDSYECAAEM EEHHSTCFHY AVGTADKGDS  60
IKASYLHHLS KLNGGAVVGE VARKLSKNEN TLTVGGSYVV DAHTTFKARL NNHSNLEALL  120
QHQIPTEQIW HKKKTSSNNG RYGRILKVQG GHIRQEIRLS AQTAIRFYDV EDHLGYDRPS  180
KAIDWLIDKA KAAIEALDDS YATHHKSTMN NMSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.25e-20TCP family protein