PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G31618
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 57aa    MW: 6482.79 Da    PI: 11.2707
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G31618genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.83e-231156146
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 k+i+n   rqvtfskRr g+lKKA ELSvLCd e avi+fs tgkl
  Ro05_G31618 11 KKIDNLPARQVTFSKRRRGLLKKAGELSVLCDSEFAVILFSATGKL 56
                 6899*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    
MKTTREKIKI KKIDNLPARQ VTFSKRRRGL LKKAGELSVL CDSEFAVILF SATGKLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.14e-20MIKC_MADS family protein